Web Access Research Portal
Research Report 2018 - Fisheries and Aquaculture
| Journal Article |
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| Adair, BJ and Purser, GJ and Patil, JG, “Peripheral olfactory structures and maturity-related crypt receptor neuron kinetics in the olfactory epithelium of carp Cyprinus carpio (L.): implications for carnal vulnerability and pest management”, Marine and Freshwater Research, 69 (10) pp. 1604-1613. doi:10.1071/MF17386 ISSN 1448-6059 (2018) [Refereed Article] |
| Alexander, KA and Hobday, AJ and Cvitanovic, C and Ogier, E and Nash, KL and Cottrell, RS and Fleming, A and Fudge, M and Fulton, EA and Frusher, S and Kelly, R and MacLeod, CK and Pecl, GT and van Putten, I and Vince, J and Watson, RA, “Progress in integrating natural and social science in marine ecosystem-based management research”, Marine and Freshwater Research, 70 (1) pp. 71-83. doi:10.1071/MF17248 ISSN 1323-1650 (2018) [Refereed Article] |
| Anderson, KC and Knuckey, R* and Canepa, M* and Elizur, A*, “A transcriptomic investigation of appetite-regulation and digestive processes in giant grouper Epinephelus lanceolatus during early larval development”, Journal of Fish Biology, 93 (4) pp. 694-710. doi:10.1111/jfb.13798 ISSN 0022-1112 (2018) [Refereed Article] |
| Audzijonyte, A and Pecl, GT, “Deep impact of fisheries”, Nature Ecology and Evolution, 2 pp. 1348-1349. doi:10.1038/s41559-018-0653-9 ISSN 2397-334X (2018) [Letter or Note in Journal] |
| Blandford, MI* and Taylor-Brown, A* and Schlacher, TA* and Nowak, B and Polkinghorne, A*, “Epitheliocystis in fish: an emerging aquaculture disease with a global impact”, Transboundary and Emerging Diseases, 65 (6) pp. 1436-1446. doi:10.1111/tbed.12908 ISSN 1865-1674 (2018) [Refereed Article] |
| Bonebrake, TC* and Brown, CJ* and Bell, JD* and Blanchard, JL and Chauvenet, A* and Champion, C and Chen, I-C* and Clark, TD and Colwell, RK* and Danielsen, F* and Dell, AI* and Donelson, JM* and Evengard, B* and Ferrier, S* and Frusher, S and Garcia, RA* and Griffis, RB* and Hobday, AJ and Jarzyna, MA* and Lee, E and Lenoir, J* and Linnetved, H* and Martin, VY* and McCormack, PC and McDonald, J and McDonald-Madden, E* and Mitchell, N* and Mustonen, T* and Pandolfi, JM* and Pettorelli, N* and Possingham, H* and Pulsifer, P* and Reynolds, M* and Scheffers, BR* and Sorte, CJB* and Strugnell, JM* and Tuanmu, M-N* and Twiname, S and Verges, A* and Villanueva, C and Wapstra, E and Wernberg, T* and Pecl, GT, “Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science”, Biological Reviews, 93 (1) pp. 284-305. doi:10.1111/brv.12344 ISSN 1464-7931 (2018) [Refereed Article] |
| Bowden, AJ and Andrewartha, SJ and Elliott, NG and Frappell, PB and Clark, TD, “Negligible differences in metabolism and thermal tolerance between diploid and triploid Atlantic salmon (Salmo salar)”, Journal of Experimental Biology, 221 Article jeb.166975. doi:10.1242/jeb.166975 ISSN 0022-0949 (2018) [Refereed Article] |
| Briceno, FA and Polymeropoulos, ET and Fitzgibbon, QP and Dambacher, JM* and Pecl, GT, “Changes in metabolic rate of spiny lobster under predation risk”, Marine Ecology Progress Series, 598 pp. 71-84. doi:10.3354/meps12644 ISSN 0171-8630 (2018) [Refereed Article] |
| Champion, C and Hobday, AJ and Zhang, X* and Pecl, GT and Tracey, SR, “Changing windows of opportunity: past and future climate-driven shifts in temporal persistence of kingfish (Seriola lalandi) oceanographic habitat within south-eastern Australian bioregions”, Marine and Freshwater Research, 70 (1) pp. 33-42. doi:10.1071/MF17387 ISSN 1323-1650 (2018) [Refereed Article] |
| Champion, C and Hobday, AJ and Tracey, SR and Pecl, GT, “Rapid shifts in distribution and high-latitude persistence of oceanographic habitat revealed using citizen science data from a climate change hotspot”, Global Change Biology, 24 (11) pp. 5440-5453. doi:10.1111/gcb.14398 ISSN 1354-1013 (2018) [Refereed Article] |
| Dang, TS and Basson, L* and Bach, L* and Sonne, C* and Norregaard, R* and Nowak, B, “Trichodinid infections in internal organs of shorthorn sculpin (Myoxocephalus scorpius) collected around an industrial harbour in Nuuk, Greenland”, Parasitology, 146 (4) pp. 506-510. doi:10.1017/S0031182018001774 ISSN 0031-1820 (2019) [Refereed Article] |
| Davies, CH* and Ajani, P* and Armbrecht, L and Atkins, N and Baird, ME* and Beard, J and Bonham, P* and Burford, M* and Clementson, L* and Coad, P* and Crawford, C and Dela-Cruz, J* and Doblin, MA* and Edgar, S* and Eriksen, R and Everett, JD* and Furnas, M* and Harrison, DP* and Hassler, C* and Henschke, N* and Hoenner, X and Ingleton, T* and Jameson, I* and Keesing, J* and Leterme, SC* and McLaughlin, MJ* and Miller, M* and Moffatt, D* and Moss, A* and Nayar, S* and Patten, NL* and Patten, R* and Pausina, SA* and Proctor, R and Raes, E* and Robb, M* and Rothlisberg, P* and Saeck, EA* and Scanes, P* and Suthers, IM* and Swadling, KM and Talbot, S* and Thompson, P* and Thompson, PG* and Uribe-Palomino, J* and van Ruth, P* and Waite, AM* and Wright, S and Richardson, AJ*, “A database of chlorophyll a in Australian waters”, Scientific Data, 5 Article 180018. doi:10.1038/sdata.2018.18 ISSN 2052-4463 (2018) [Refereed Article] |
| Durand, A and Chase, Z and Noble, TL and Bostock, H* and Jaccard, SL* and Townsend, AT and Bindoff, NL and Neil, H* and Jacobsen, G*, “Reduced oxygenation at intermediate depths of the southwest Pacific during the last glacial maximum”, Earth and Planetary Science Letters, 491 pp. 48-57. doi:10.1016/j.epsl.2018.03.036 ISSN 0012-821X (2018) [Refereed Article] |
| Dykman, M and Prahalad, V, “Tamar Saltmarsh Monitoring Program: citizen science monitoring of the tidal treasures of the Tamar River estuary, Tasmania, Australia”, Australian Journal of Maritime & Ocean Affairs, 10 (4) pp. 222-240. doi:10.1080/18366503.2018.1502030 ISSN 1836-6503 (2018) [Refereed Article] |
| Ericson, JA and Hellessey, N and Kawaguchi, S and Nicol, S and Nichols, PD and Hoem, N* and Virtue, P, “Adult Antarctic krill proves resilient in a simulated high CO2 ocean”, Communications Biology, 1 Article 190. doi:10.1038/s42003-018-0195-3 ISSN 2399-3642 (2018) [Refereed Article] |
| Fatima, S and Adams, M and Wilkinson, R, “Seasonal variation in the profile of sex steroids and histological testicular development of brook trout (Salvelinus fontinalis Mitchill) during the annual reproductive cycle in Tasmania”, Australian Journal of Zoology, 65 (5) pp. 313-318. doi:10.1071/ZO17030 ISSN 0004-959X (2018) [Refereed Article] |
| Fowles, AE and Stuart-Smith, RD and Stuart-Smith, JF and Hill, NA and Kirkpatrick, JB and Edgar, GJ, “Effects of urbanisation on macroalgae and sessile invertebrates in southeast Australian estuaries”, Estuarine, Coastal and Shelf Science, 205 pp. 30-39. doi:10.1016/j.ecss.2018.02.010 ISSN 0272-7714 (2018) [Refereed Article] |
| Fu, C* and Travers-Trolet, M* and Velez, L* and Gruss, A* and Bundy, A* and Shannon, LJ* and Fulton, EA and Akoglu, E* and Houle, JE* and Coll, M* and Verley, P* and Heymans, JJ* and John, E* and Shin, YJ*, “Risky business: the combined effects of fishing and changes in primary productivity on fish communities”, Ecological Modelling, 368 pp. 265-276. doi:10.1016/j.ecolmodel.2017.12.003 ISSN 0304-3800 (2018) [Refereed Article] |
| Ghosh, B and Crosbie, PBB and Nowak, BF and Bridle, AR, “A highly sensitive, non-invasive qPCR-based strategy for direct quantification of Yersinia ruckeri in fish faeces”, Journal of Fish Diseases, 41 (9) pp. 1421-1428. doi:10.1111/jfd.12839 ISSN 0140-7775 (2018) [Refereed Article] |
| Gillies, CL* and McLeod, IM* and Alleway, HK* and Cook, P* and Crawford, C and Creighton, C* and Diggles, B* and Ford, J* and Hamer, P* and Heller-Wagner, G* and Lebrault, E* and Le Port, A* and Russell, K* and Sheaves, M* and Warnock, B*, “Australian shellfish ecosystems: past distribution, current status and future direction”, PLoS ONE, 13 (2) Article 0190914. doi:10.1371/journal.pone.0190914 ISSN 1932-6203 (2018) [Refereed Article] |
| Hellessey, N and Ericson, JA and Nichols, PD and Kawaguchi, S and Nicol, S and Hoem, N* and Virtue, P, “Seasonal and interannual variation in the lipid content and composition of Euphausia superba Dana, 1850 (Euphausiacea) samples derived from the Scotia Sea fishery”, Journal of Crustacean Biology, 38 (6) pp. 673-681. doi:10.1093/jcbiol/ruy053 ISSN 0278-0372 (2018) [Refereed Article] |
| Hornborg, S* and Hobday, AJ and Ziegler, F* and Smith, ADM and Green, BS, “Shaping sustainability of seafood from capture fisheries integrating the perspectives of supply chain stakeholders through combining systems analysis tools”, ICES Journal of Marine Science, 75 (6) pp. 1965-1974. doi:10.1093/icesjms/fsy081 ISSN 1054-3139 (2018) [Refereed Article] |
| Kordjazi, Z and Frusher, S and Buxton, CD and Gardner, C and Bird, T*, “Accurate estimates of tag-induced mortality rates are contingent on the number of tagged and recaptured lobsters”, Bulletin of Marine Science, 94 (3) pp. 1017-1034. doi:10.5343/bms.2017.1098 ISSN 0007-4977 (2018) [Refereed Article] |
| Mardones, JI and Shabala, L and Shabala, S and Dorantes-Aranda, JJ and Seger, A and Hallegraeff, GM, “Fish gill damage by harmful microalgae newly explored by microelectrode ion flux estimation techniques”, Harmful Algae, 80 pp. 55-63. doi:10.1016/j.hal.2018.09.004 ISSN 1568-9883 (2018) [Refereed Article] |
| Neumann, L and Bridle, A and Leef, M and Nowak, B, “Annual variability of infection with Cardicola forsteri and Cardicola orientalis in ranched and wild southern bluefin tuna (Thunnus maccoyii)”, Aquaculture, 487 pp. 1-6. doi:10.1016/j.aquaculture.2017.12.042 ISSN 0044-8486 (2018) [Refereed Article] |
| Nguyen, NH* and Fitzgibbon, QP and Quinn, J* and Smith, G and Battaglene, S and Knibb, W*, “Can metamorphosis survival during larval development in spiny lobster Sagmariasus verreauxi be improved through quantitative genetic inheritance?”, BMC Genetics, 19 (1) Article 27. doi:10.1186/s12863-018-0621-z ISSN 1471-2156 (2018) [Refereed Article] |
| Nguyen, TD and Crosbie, PBB and Nowak, BF and Bridle, AR, “The effects of inactivation methods of Yersinia ruckeri on the efficacy of single dip vaccination in Atlantic salmon (Salmo salar)”, Journal of Fish Diseases, 41 (7) pp. 1173-1176. doi:10.1111/jfd.12803 ISSN 0140-7775 (2018) [Refereed Article] |
| Nichols, R and Yamazaki, S and Jennings, S, “Allocation of harvest between user groups in a fishery with habitat effect”, Natural Resource Modeling, 31 (3) Article e12179. doi:10.1111/nrm.12179 ISSN 0890-8575 (2018) [Refereed Article] |
| Norregaard, RD* and Dang, TS and Bach, L* and Geertz-Hansen, O* and Gustavson, K* and Aastrup, P* and Leifsson, PS* and Sondergaard, J* and Nowak, BF and Sonne, C*, “Comparison of heavy metals, parasites and histopathology in sculpins (Myoxocephalus spp.) from two sites at a lead-zinc mine in North East Greenland”, Environmental Research, 165 pp. 306-316. doi:10.1016/j.envres.2018.04.016 ISSN 0013-9351 (2018) [Refereed Article] |
| Novaglio, C and Smith, ADM and Frusher, S and Ferretti, F* and Klaer, N and Fulton, EA, “Fishery development and exploitation in South East Australia”, Frontiers in Marine Science, 5 Article 145. doi:10.3389/fmars.2018.00145 ISSN 2296-7745 (2018) [Refereed Article] |
| Nowak, BF and Archibald, JM*, “Opportunistic but lethal: the mystery of Paramoebae”, Trends in Parasitology, 34 (5) pp. 404-419. doi:10.1016/j.pt.2018.01.004 ISSN 1471-4922 (2018) [Refereed Article] |
| Nuez-Ortin, WG and Carter, CG and Nichols, PD and Cooke, IR* and Wilson, R, “Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature”, BMC Genomics, 19 Article 133. doi:10.1186/s12864-018-4517-0 ISSN 1471-2164 (2018) [Refereed Article] |
| Nursey-Bray, M* and Palmer, R* and Pecl, G, “Spot, log, map: assessing a marine virtual citizen science program against Reed's best practice for stakeholder participation in environmental management”, Ocean and Coastal Management, 151 pp. 1-9. doi:10.1016/j.ocecoaman.2017.10.031 ISSN 0964-5691 (2018) [Refereed Article] |
| Ortega-Cisneros, K* and Yokwana, S* and Sauer, W* and Cochrane, K* and Cockcroft, A* and James, NC* and Potts, WM* and Singh, L* and Smale, M* and Wood, A* and Pecl, G, “Assessment of the likely sensitivity to climate change for the key marine species in the southern Benguela system”, African Journal of Marine Science, 40 (3) pp. 279-292. doi:10.2989/1814232X.2018.1512526 ISSN 1814-232X (2018) [Refereed Article] |
| Parker, RWR and Blanchard, JL and Gardner, C and Green, BS and Hartmann, K and Tyedmers, PH* and Watson, RA, “Fuel use and greenhouse gas emissions of world fisheries”, Nature Climate Change, 8 pp. 333-337. doi:10.1038/s41558-018-0117-x ISSN 1758-678X (2018) [Refereed Article] |
| Plaganyi, EE* and McGarvey, R* and Gardner, C and Caputi, N* and Dennis, D* and de Lestang, S* and Hartmann, K and Liggins, G* and Linnane, A* and Ingrid, E* and Arlidge, B* and Green, B and Villanueva, C, “Overview, opportunities and outlook for Australian spiny lobster fisheries”, Reviews in Fish Biology and Fisheries, 28 (1) pp. 57-87. doi:10.1007/s11160-017-9493-y ISSN 0960-3166 (2017) [Refereed Article] |
| Punt, AE* and Day, J* and Fay, G* and Haddon, M* and Klaer, N and Little, LR* and Privitera-Johnson, K* and Smith, ADM and Smith, DC* and Sporcic, M* and Thomson, R* and Tuck, GN* and Upston, J* and Wayte, S*, “Retrospective investigation of assessment uncertainty for fish stocks off southeast Australia”, Fisheries Research, 198 pp. 117-128. doi:10.1016/j.fishres.2017.10.007 ISSN 0165-7836 (2018) [Refereed Article] |
| Ramos, JE and Pecl, GT and Moltschaniwskyj, N* and Semmens, JM and Souza, CA* and Strugnell, JM*, “Population genetic signatures of a climate change driven marine range extension”, Scientific Reports, 8 Article 9558. doi:10.1038/s41598-018-27351-y ISSN 2045-2322 (2018) [Refereed Article] |
| Ripple, WJ* and Wolf, C* and Newsome, TM* and Galetti, M* and Alamgir, M* and Crist, E* and Mahmoud, MI* and Laurance, WF* and Fulton, EA, and 15,364 scientist signatories from 184 countries, “World scientists’ warning to humanity: a second notice”, Bioscience, 67 (12) pp. 1026-1028. doi:10.1093/biosci/bix125 ISSN 0006-3568 (2017) [Contribution to Refereed Journal] |
| Rosenberg, AA* and Kleisner, KM* and Afflerbach, J* and Anderson, SC* and Dickey-Collas, M* and Cooper, AB* and Fogarty, MJ* and Fulton, EA and Gutierrez, NL* and Hyde, KJW* and Jardim, E* and Jensen, OP* and Kristiansen, T* and Longo, C* and Minte-Vera, CV* and Minto, C* and Mosqueira, I* and Osio, GC* and Ovando, D* and Selig, ER* and Thorson, JT* and Walsh, JC* and Ye, Y*, “Applying a new ensemble approach to estimating stock status of marine fisheries around the world”, Conservation Letters, 11 (1) Article e12363. doi:10.1111/conl.12363 ISSN 1755-263X (2017) [Refereed Article] |
| Setyawan, E and Sianipar, AB* and Erdmann, MV* and Fischer, AM and Haddy, JA and Beale, CS* and Lewis, SA* and Mambrasar, R*, “Site fidelity and movement patterns of reef manta rays (Mobula alfredi: Mobulidae) using passive acoustic telemetry in northern Raja Ampat, Indonesia”, Nature Conservation Research, 3 (4) pp. 1-15. doi:10.24189/ncr.2018.043 ISSN 2500-008X (2018) [Refereed Article] |
| Strom, HK* and Ohtani, M* and Nowak, B and Boutrup, TS* and Jones, B* and Raida, MK* and Bojesen, AM*, “Experimental infection by Yersinia ruckeri O1 biotype 2 induces brain lesions and neurological signs in rainbow trout (Oncorhynchus mykiss)”, Journal of Fish Diseases, 41 (3) pp. 529-537. doi:10.1111/jfd.12754 ISSN 0140-7775 (2018) [Refereed Article] |
| Sweetman, PC and Haddy, JA and Robertson, SG*, “Multi-decadal variation in cohort specific sex ratios and otolith increment growth characteristics of juvenile blue grenadier (Macruronus novaezelandiae)”, Fisheries Research, 201 pp. 79-87. doi:10.1016/j.fishres.2018.01.009 ISSN 0165-7836 (2018) [Refereed Article] |
| Taylor-Brown, A* and Pillonel, T* and Greub, G* and Vaughan, L* and Nowak, B and Polkinghorne, A*, “Metagenomic analysis of fish-associated Ca. Parilichlamydiaceae reveals striking metabolic similarities to the terrestrial Chlamydiaceae”, Genome Biology and Evolution, 10 (10) pp. 2614-2628. doi:10.1093/gbe/evy195 ISSN 1759-6653 (2018) [Refereed Article] |
| Testa, FJ and Villanueva, C and Cooke, DR and Zhang, L, “Lithological and hydrothermal alteration mapping of epithermal, porphyry and tourmaline breccia districts in the Argentine Andes using ASTER imagery”, Remote Sensing, 10 (2) Article 203. doi:10.3390/rs10020203 ISSN 2072-4292 (2018) [Refereed Article] |
| Tidd, A and Blanchard, JL and Kell, L* and Watson, RA, “Predicting global tuna vulnerabilities with spatial, economic, biological and climatic considerations”, Scientific Reports, 8 Article 10572. doi:10.1038/s41598-018-28805-z ISSN 2045-2322 (2018) [Refereed Article] |
| Tittensor, DP* and Eddy, TD* and Lotze, HK* and Galbraith, ED* and Cheung, W* and Barange, M* and Blanchard, JL and Bopp, L* and Bryndum-Buchholz, A* and Buchner, M* and Bulman, C* and Carozza, DA* and Christensen, V* and Coll, M* and Dunne, JP* and Fernandes, JA* and Fulton, EA and Hobday, AJ and Huber, V* and Jennings, S* and Jones, M* and Lehodey, P* and Link, JS* and Mackinson, S* and Maury, O* and Niiranen, S* and Oliveros-Ramos, R* and Roy, T* and Schewe, J* and Shin, Y-J* and Stock, CA* and Underwood, PJ* and Volkholz, J* and Watson, JR* and Walker, ND*, “A protocol for the intercomparison of marine fishery and ecosystem models: fish-MIP v1.0”, Geoscientific Model Development, 11 (4) pp. 1421-1422. doi:10.5194/gmd-2017-209 ISSN 1991-959X (2018) [Refereed Article] |
| van Denderen, PD* and Lindegren, M* and MacKenzie, BR* and Watson, RA and Andersen, KH*, “Global patterns in marine predatory fish”, Nature Ecology and Evolution, 2 (1) pp. 65-70. doi:10.1038/s41559-017-0388-z ISSN 2397-334X (2018) [Refereed Article] |
| van der Loos, LM* and Schmid, M and Leal, PP and McGraw, CM* and Britton, D and Revill, AT* and Virtue, P and Nichols, PD and Hurd, CL, “Responses of macroalgae to CO2 enrichment cannot be inferred solely from their inorganic carbon uptake strategy”, Ecology and Evolution, 9 (1) pp. 125-140. doi:10.1002/ece3.4679 ISSN 2045-7758 (2018) [Refereed Article] |
| Vasile, R and Hartmann, K and Hobday, AJ* and Oliver, E and Tracey, S, “Evaluation of hydrodynamic ocean models as a first step in larval dispersal modelling”, Continental Shelf Research, 152 pp. 38-49. doi:10.1016/j.csr.2017.11.001 ISSN 0278-4343 (2018) [Refereed Article] |
| Watson, RA and Tidd, A*, “Mapping nearly a century and a half of global marine fishing: 1869-2015”, Marine Policy, 93 pp. 171-177. doi:10.1016/j.marpol.2018.04.023 ISSN 0308-597X (2018) [Refereed Article] |
| Weltz, K and Lyle, JM and Bell, JD and Semmens, JM, “Dietary analysis reveals the vulnerability of the endangered Maugean skate (Zearaja maugeana) to benthic changes in Macquarie Harbour”, Marine and Freshwater Research, 70 (5) pp. 745-753. doi:10.1071/MF18231 ISSN 1323-1650 (2018) [Refereed Article] |
| Westlake, EL* and Williams, M and Rawlinson, N, “Behavioural responses of draughtboard sharks (Cephaloscyllium laticeps) to rare earth magnets: implications for shark bycatch management within the Tasmanian southern rock lobster fishery”, Fisheries Research, 200 pp. 84-92. doi:10.1016/j.fishres.2018.01.001 ISSN 0165-7836 (2018) [Refereed Article] |
| Wright, DW* and Nowak, B and Oppedal, F* and Crosbie, P and Stien, LH* and Dempster, T*, “Repeated sublethal freshwater exposures reduce the amoebic gill disease parasite, Neoparamoeba perurans, on Atlantic salmon”, Journal of Fish Diseases, 41 (9) pp. 1403-1410. doi:10.1111/jfd.12834 ISSN 0140-7775 (2018) [Refereed Article] |
| Zhao, Z and Oliver, ECJ and Ballestero, D* and Vargas-Hernandez, JM* and Holbrook, NJ, “Influence of the Madden-Julian oscillation on Costa Rican mid-summer drought timing”, International Journal of Climatology, 39 (1) pp. 292-301. doi:10.1002/joc.5806 ISSN 0899-8418 (2019) [Refereed Article] |
* This author is not affiliated with the University of Tasmania.